PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24620
Common NameKK1_026049
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 133aa    MW: 14829.8 Da    PI: 5.7279
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24620genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.41.8e-5719114297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    reqdr+lPianvsrimkkvlP+nakisk+aket+qecvsefisfvt+easdkcq+ekrktingddllwa+++lGfedy+eplk+yl+kyre+egek
  C.cajan_24620  19 REQDRLLPIANVSRIMKKVLPGNAKISKEAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTSLGFEDYAEPLKAYLHKYREIEGEK 114
                    89********************************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5416120IPR009072Histone-fold
SuperFamilySSF471135.28E-4221124IPR009072Histone-fold
PfamPF008081.7E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-215270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-217189No hitNo description
PRINTSPR006151.3E-2190108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAESDNESGG GNNELGGCRE QDRLLPIANV SRIMKKVLPG NAKISKEAKE TMQECVSEFI  60
SFVTGEASDK CQKEKRKTIN GDDLLWAMTS LGFEDYAEPL KAYLHKYREI EGEKTAMIGR  120
HQHATTAFYA NPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4819109292Transcription factor HapC (Eurofung)
4g92_B1e-4819109292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507678.12e-85PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233103e-67NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A151SBC74e-97A0A151SBC7_CAJCA; Nuclear transcription factor Y subunit B-3
STRINGGLYMA15G12570.14e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-64nuclear factor Y, subunit B3